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compliance

FQHC Cost Report Preparation Checklist

Use this annual FQHC cost report preparation checklist to gather the visit, revenue, payroll, and allocation data needed for CMS-222-17 before filing.

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Built for: Federally Qualified Health Centers · Community Health Clinics · Primary Care Networks · Behavioral Health Clinics

Overview

This FQHC Cost Report Preparation Checklist is an annual task template for gathering the source data needed to prepare a Federally Qualified Health Center Medicare cost report, including visit counts, revenue support, payroll records, expense detail, and allocation inputs. It is built for the prep phase before CMS-222-17 is assembled, when teams need to confirm that every supporting report, schedule, and reconciliation is available and tied back to the general ledger.

Use this template when your finance, reimbursement, or revenue cycle team needs a repeatable way to collect documents from clinic operations, billing, payroll, and accounting. It is especially useful for multi-site FQHCs, organizations with multiple service lines, or any center that relies on several people to provide source records. The checklist helps the DRI track what is complete, what is missing, and what is still blocking the filing.

Do not use it as a substitute for the final cost report, audit workpapers, or legal review. If your organization has no Medicare cost report filing requirement, or if the reporting period is not yet closed, this checklist may be premature. It also should not be used as a vague document request list; each checklist item should be specific enough to verify with a yes/no/N/A answer and tied to a concrete source report or file.

Standards & compliance context

  • This template supports preparation for CMS-222-17 by organizing the records commonly needed to substantiate FQHC cost report entries.
  • Use it to preserve an audit trail for source documents, reconciliations, and approvals that may be reviewed during reimbursement or audit work.
  • It should be customized to match your organization’s reporting structure, payer mix, and any state or grant documentation requirements.
  • Final filing decisions should be reviewed by qualified reimbursement, finance, or compliance staff familiar with FQHC reporting rules.

General regulatory context for orientation only — verify current requirements with counsel or the relevant agency before relying on this template for compliance.

How to use this template

  1. Create the checklist for the reporting year and assign a DRI who will coordinate finance, billing, payroll, and clinic operations.
  2. Add atomic checklist items for each source document or reconciliation needed for CMS-222-17 prep, such as visit totals, revenue detail, payroll registers, and allocation support.
  3. Set each item to the person or department that owns the source record, and mark blocking items as critical only when they can delay filing or affect compliance.
  4. Run the checklist after year-end close and verify each item with a linked report, file path, or signed-off reconciliation before the cost report is drafted.
  5. Review any missing or inconsistent items, resolve them with the source owner, and archive the completed checklist with the final cost report workpapers.

Best practices

  • Keep each checklist item to one document, one reconciliation, or one verification step so the answer is unambiguous.
  • Tie every visit count to the same reporting period and site structure used in the cost report draft.
  • Mark items as blocking only when the missing record prevents accurate filing or creates a compliance risk.
  • Use the general ledger as the reconciliation anchor for payroll, expense, and revenue support before data is handed to the preparer.
  • Require source owners to attach the report or file path, not just confirm that the data exists.
  • Separate clinic-level inputs from corporate allocations so site data does not get mixed with shared overhead support.
  • Review the checklist early enough to leave time for corrections, especially when outside consultants depend on the package.

What this template typically catches

Issues teams running this template most often surface in practice:

Visit totals do not reconcile to the billing system or encounter reports.
Payroll support is missing for shared staff or split-funded positions.
Revenue reports are incomplete because adjustments, refunds, or write-offs were excluded.
Expense allocations are documented inconsistently across sites or departments.
Source files are stored in multiple locations, making review and audit support slow.
The reporting period is unclear, so documents from the wrong year are pulled into the package.
Clinic managers provide summaries without the underlying verification report.

Common use cases

FQHC finance manager preparing year-end support
A finance manager uses the checklist to collect the general ledger, payroll registers, and visit reports needed before the cost report is drafted. The checklist makes it clear which items are still blocking the package and which are ready for review.
Reimbursement analyst coordinating multi-site data
A reimbursement analyst gathers site-level visit counts and shared cost allocations from several clinic locations. The checklist helps keep each site’s source documents separate while still rolling them into one filing package.
Outside consultant receiving an organized handoff
An FQHC that outsources cost report preparation uses the checklist to hand over a complete source package. The consultant can see which reports were verified, which reconciliations are pending, and where to find the supporting files.
Compliance review before filing deadline
A compliance lead reviews the completed checklist to confirm that the organization has a defensible audit trail for the cost report inputs. This is useful when leadership wants a final verification step before submission.

Frequently asked questions

What does this FQHC cost report preparation checklist cover?

This checklist covers the data collection work that happens before an FQHC Medicare cost report is prepared, including visit counts, revenue support, payroll records, expense allocations, and supporting schedules. It is meant to help the DRI confirm that the source documents are complete and ready for CMS-222-17 preparation. It does not replace the cost report itself or the final review by your finance or reimbursement team.

How often should this checklist run?

Use it annually as part of your year-end close and cost report prep cycle. Many FQHCs also run a lighter version quarterly or monthly to reduce the year-end scramble and catch missing support earlier. If your organization has multiple sites or a complex revenue cycle, a recurring cadence can make the annual filing much easier to assemble.

Who should own this checklist?

The DRI is usually someone in finance, reimbursement, or revenue cycle who can coordinate across payroll, billing, operations, and clinic leadership. The checklist can be assigned as a simple task to one owner, with checklist items delegated to the people who hold the source records. If your cost report is prepared by an outside consultant, the internal DRI should still own the data-gathering step.

Is this checklist tied to a specific regulatory requirement?

Yes, it is designed around the documentation needed to support an FQHC Medicare cost report, including CMS-222-17 preparation. It helps organize the records that typically back up allowable costs, visit counts, and revenue reconciliation. You should still confirm the final reporting approach with your reimbursement advisor or auditor, especially if your organization has unusual service lines or ownership changes.

What are the most common mistakes this checklist helps prevent?

The most common issues are missing visit totals, incomplete payroll support, uncategorized expenses, and source documents that do not reconcile to the general ledger. Another frequent problem is waiting until the filing deadline to ask clinic managers for records, which creates blocking work and delays. This checklist makes each item independently verifiable so gaps are visible before the report is assembled.

Can we customize this checklist for our FQHC?

Yes, you should customize it for your chart of accounts, service mix, sites, and any grants or contract arrangements that affect reporting. You can add checklist items for specific departments, wraparound services, or local documentation requirements. Keep the items atomic so each one has a clear yes, no, or N/A answer.

How does this compare with an ad-hoc email request for documents?

An ad-hoc email thread usually creates scattered attachments, unclear ownership, and no easy way to see what is still blocking the report. This checklist turns the request into a repeatable task with a defined DRI, priority, and verification step for each source document. That makes it easier to track completion and reduces back-and-forth during filing season.

Can this checklist connect to our accounting or document systems?

Yes, it works well alongside accounting, payroll, billing, and document storage tools because each checklist item can point to a source file or report. Many teams link the checklist to the general ledger, payroll exports, visit reports, and shared folders for supporting schedules. The key is to store the verification evidence where reviewers can find it quickly during prep and audit support.

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